MGT::KmerStates Member List

This is the complete list of members for MGT::KmerStates, including all inherited members.

firstState()	MGT::KmerStates	[inline]
firstState() const	MGT::KmerStates	[inline]
getData(PKmerState pState)	MGT::KmerStates	[inline]
getData(Ind ind)	MGT::KmerStates	[inline]
getFirstIdState() const	MGT::KmerStates	[inline]
getKmer(Ind ind) const	MGT::KmerStates	[inline]
getLastIdState() const	MGT::KmerStates	[inline]
getNumIds() const	MGT::KmerStates	[inline]
getState(Ind ind) const	MGT::KmerStates	[inline]
idState(PKmerState pState) const	MGT::KmerStates	[inline]
iFirstStateNonDegen	MGT::KmerStates	[protected]
indState(const PKmerState pState) const	MGT::KmerStates	[inline]
initAllKmers()	MGT::KmerStates	[protected]
initRevCompl()	MGT::KmerStates	[protected]
isDegenState(PKmerState pState) const	MGT::KmerStates	[inline]
isRevComp(PKmerState pState) const	MGT::KmerStates	[inline]
kmerState(PKmerState pState) const	MGT::KmerStates	[inline]
KmerStates(int kmerLen, const AbcConvCharToInt *pAbcConv, RC_POLICY revCompPolicy=RC_MERGE, KmerId firstIdState=1)	MGT::KmerStates
kmerToIndex(const Kmer &kmer) const	MGT::KmerStates	[inline]
kmerToState(const Kmer &kmer) const	MGT::KmerStates	[inline, protected]
m_firstIdState	MGT::KmerStates	[protected]
nextKmer(const Kmer &currKmer, INuc c, Kmer &nextKmer) const	MGT::KmerStates	[inline, protected]
nextState(PKmerState pState, INuc c)	MGT::KmerStates	[inline]
numStates() const	MGT::KmerStates	[inline]
print(std::ostream &out) const	MGT::KmerStates
revCompState(PKmerState pState)	MGT::KmerStates	[inline]
revCompStateFirst(PKmerState pState)	MGT::KmerStates	[inline]
setData(PKmerState pState, PKmerStateData pStateData)	MGT::KmerStates	[inline]