counts(IterVal valObs, IterVal valExp, IterInd ind, IterInd sizes) | MGT::KmerCounterLadder | |
doCNuc(CNuc cnuc) | MGT::KmerCounterLadder | [inline] |
KmerCounterLadder(int kmerLen, const AbcConvCharToInt *pAbcConv=0, RC_POLICY revCompPolicy=RC_DIRECT) | MGT::KmerCounterLadder | |
m_counters | MGT::KmerCounterLadder | [protected] |
m_revCompPolicy | MGT::KmerCounterLadder | [protected] |
m_topBotDep | MGT::KmerCounterLadder | [protected] |
m_topOneDep | MGT::KmerCounterLadder | [protected] |
makeTopDownKmerInd() | MGT::KmerCounterLadder | [protected] |
maxNumKmers(ULong seqLen, IterInd sizes) const | MGT::KmerCounterLadder | |
numKmers(IterInd sizes) const | MGT::KmerCounterLadder | |
process(IterCNuc first, IterCNuc last) | MGT::KmerCounterLadder | [inline] |