| MGT::AbcConvCharToInt | Alphabet convertor from one-letter character to integer index |
| MGT::App::App | |
| MGT::Util::ArrayAppender | |
| MGT::Util::ArrStr | |
| MGT::BatchRun::BatchJob | |
| MGT::Sql::BulkInserterFileMy | |
| MGT::Sql::BulkReader | |
| MGT::Bits::Factory::Bunch | |
| MGT::Proj::CrisprApp::CrisprApp | |
| MGT::Proj::CrisprGosApp::CrisprGosApp | ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ## |
| MGT::Proj::CrisprMooreApp::CrisprMooreApp | ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ## |
| MGT::CrossValidatorApp::CrossValidatorApp | |
| MGT::Proj::HctApp::CvTreeId | |
| MGT::Db::DbSeqSource | |
| MGT::Sql::DbSql | |
| MGT::Sql::DbSqlLite | |
| MGT::Sql::DbSqlMonet | |
| MGT::Sql::DbSqlMy | |
| MGT::Entrez::EzRequest | |
| MGT::Bits::Factory::Factory | |
| MGT::Bits::Factory::factoryDescriptor | |
| MGT::Bits::Factory::FactoryInstanceMethod | |
| MGT::Bits::Factory::FactoryMixin | |
| MGT::SeqIO::FakeSequenceChecker | |
| MGT::FastaIO::FastaReader | |
| MGT::BioUtil::FeatureLocIndex | |
| MGT::Proj::GbFeatApp::GbFeatApp | |
| MGT::GFF::GFF3Attributes | |
| MGT::GFFTools::GFF3Graphics | |
| MGT::GFF::GFF3Header | |
| MGT::GFF::GFF3Record | |
| MGT::PhageHostApp::GFF3RecordPhageHostAnnot | |
| MGT::Proj::HctApp::HctApp | |
| MGT::SampDb::HdfSampInd | |
| MGT::Util::HistogramRdnGenerator | |
| MGT::Svm::IdLabels | |
| MGT::FeatIO::IdMap | |
| MGT::ImmApp::ImmApp | |
| MGT::ImmClassifierApp::ImmClassifierApp | |
| MGT::ImmScalingApp::ImmScalingApp | |
| MGT::Imm::ImmScores | |
| MGT::Kmer | Class that describes a k-mer in integer index representation |
| MGT::KmerBadAlphabet | Kmer exception to raise when supplied alphabet string exceeds implementation datatype limits |
| MGT::KmerBadNuc | Kmer exception to raise when unallowed one-letter nucleotide code is received in the input |
| MGT::KmerCounter | Class that computes k-mer counts of incoming nucleotide sequence |
| MGT::KmerCounterLadder | Class that computes k-mer frequences for k = 1...n at the same time |
| MGT::KmerError | Base Kmer exception class |
| MGT::KmerErrorLimits | Kmer exception to raise when some internal limit is exceeded by supplied input data |
| MGT::Kmers::KmerLadderSparseFeatures | |
| MGT::Kmers::KmerSparseFeatures | |
| MGT::KmerState | Class that holds a counter for one k-mer along with jump pointers for next k-mers |
| MGT::KmerStateData | Payload data class for KmerState |
| MGT::KmerStates | State machine for k-mers along with a corresponding payload object implemented in KmerStates and KmerCounter classes respectively |
| MGT::PredProcessor::LabelConv | |
| MGT::Svm::LabelRenum | |
| MGT::FeatIO::LoadSeqPreprocIdFilter | |
| MGT::FeatCommon::MGTDenseRealFeatures | |
| MGT::FeatCommon::MGTSparseData | |
| MGT::FeatCommon::MGTSparseIntFeatures | |
| MGT::FeatCommon::MGTSparseRealFeatures | |
| MGT::TaxaTree::NodeReducerVisitor | |
| MGT::TaxaIODb::NodeStorageDb | |
| MGT::TaxaIO::NodeStorageNcbiDump | |
| MGT::TaxaIO::NodeStoragePickle | |
| MGT::TaxaIO::NodeStoragePickleDict | |
| MGT::Kmers::NORM_POLICY | Feature normalization policy |
| MGT::Bits::Factory::ObjectTemplate | |
| MGT::ParamScanApp::ParamGridGen | |
| MGT::ParamScanApp::ParamScanApp | |
| MGT::ParamScanTestApp::ParamScanTestApp | |
| MGT::PredProcessor::PerfMetrics | |
| MGT::PredProcessor::PerfMetricsSet | |
| MGT::PhageHostApp::PhageHostApp | |
| MGT::PhageHostDb::PhageHostSeqPicker | |
| MGT::Proj::PhHostGosApp::PhHostGosApp | |
| MGT::Util::PopenStdinProxy | |
| MGT::PredProcessor::Predictions | |
| MGT::PredProcessor::Predictor0 | |
| boost_printer::printer | ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ## |
| MGT::SeqRandomApp::RandomSeqGenAMnom | |
| MGT::SeqRandomApp::RandomSeqGenGcFixed | |
| MGT::SeqRandomApp::RandomSeqGenGcFixedRepl | |
| MGT::SeqRandomApp::RandomSeqGenGcMnom | |
| MGT::SeqRandomApp::RandomSeqGenShuffle | |
| MGT::Proj::CrisprApp::RangeSet | |
| MGT::TaxaTree::RankFakerVisitor | |
| MGT::SeqDbFasta::SeqDbFasta | |
| MGT::Sql::SqlField | Classes that describe definitions of SQL fields and table These are used primarily to construct DDL statements |
| MGT::Sql::SqlNumpyTypeMap | |
| MGT::Sql::SqlTable | |
| MGT::Options::Struct | |
| MGT::Util::SubSamplerRandomStart | |
| MGT::Util::SubSamplerUniRandomEnd | |
| MGT::FeatIOTxt::SvmDenseFeatureWriterXyz | |
| MGT::Util::SymbolRunsCompressor | |
| MGT::Proj::SynecApp::SynecApp | |
| MGT::CollectTaxa::TaxaCollector | |
| MGT::TaxaTree::TaxaLevels | |
| MGT::TaxaTreeDb::TaxaLevelsDb | |
| MGT::TaxaTree::TaxaNode | |
| MGT::PhageHostApp::TaxaPred | |
| MGT::Util::Timer | |
| MGT::TreeSamplerApp::TreeSamplerApp | |
| MGT::PhageHostDb::VirHostParser | |
