Inherits MGT::DirStore::DirStore.
List of all members.
Detailed Description
An interface to a collection of FASTA files.
Each file is named with some ID, such as taxonomy ID.
Methods for creating the DB grouped by taxonomy and streaming
based on lists of IDs are provided.
Member Function Documentation
| def MGT::SeqDbFasta::SeqDbFasta::fastaReader |
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self, |
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id |
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Return FastaReader to read from the DB for a given ID
| def MGT::SeqDbFasta::SeqDbFasta::fastaWriter |
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self, |
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id, |
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lineLen = None, |
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mode = "w" |
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Return FastaWriter to write INTO the DB for a given ID.
@param id ID of the record
@param lineLen Length of FASTA lines
@param mode String with the same semantics as 'mode' supplied to built-in open() method
| def MGT::SeqDbFasta::SeqDbFasta::writeFasta |
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self, |
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ids, |
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out |
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Write FASTA stream for given sequence of IDs from DB into output file-like object
The documentation for this class was generated from the following file:
