Class that holds a counter for one k-mer along with jump pointers for next k-mers. More...

#include <kmers.hpp>

Public Member Functions
std::ostream &	print (std::ostream &out, const PKmerState pFirstState) const
	Print KmerState object for debugging.
Public Attributes
PKmerState	m_next [g_maxINuc]
	Array of "edges" - a pointer to another KmerState for each extended alphabet symbol.
PKmerStateData	m_pData
	Pointer to payload object.
PKmerState	m_revComp
	Pointer to a reverse-complement KmerState object.
bool	m_isRevComp
	true if we marked this state as reverse-complement (for KmerStates::isRevComp()).
KmerId	m_id
	ID of corresponding k-mer (for KmerStates::idState()).

Detailed Description

Class that holds a counter for one k-mer along with jump pointers for next k-mers.

Member Function Documentation

std::ostream & MGT::KmerState::print	(	std::ostream &	out,
		const PKmerState	pFirstState
	)		const

Print KmerState object for debugging.

Parameters:

pFirstState - pointer to the first KmerState, used here to convert internal pointers to indices