MGT::KmerStateData Class Reference

Payload data class for KmerState. More...

#include <kmers.hpp>

List of all members.

Public Attributes
ULong	count
	k-mer count.
Protected Attributes
PKmerState	m_pState
	Pointer to the owning KmerState object.
KmerId	m_id
	ID of k-mer, cached here from m_pState to avoid pointer dereferencing during sorting.

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Detailed Description

Payload data class for KmerState.

Separate class for payload allows lazy allocation of that data. The main reason is to have as few payload objects as we actually saw k-mers in the input. This in turn will allow extraction of k-mer counts in time which does not depend on the size of k-mer space (k-mer length).

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Member Data Documentation

ULong MGT::KmerStateData::count

k-mer count.

KmerId MGT::KmerStateData::m_id [protected]

ID of k-mer, cached here from m_pState to avoid pointer dereferencing during sorting.

PKmerState MGT::KmerStateData::m_pState [protected]

Pointer to the owning KmerState object.

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The documentation for this class was generated from the following file:

• mgtaxa/include/mgtaxa/kmers.hpp