MGT::TaxaTree::TaxaLevels Class Reference

Inheritance diagram for MGT::TaxaTree::TaxaLevels:

List of all members.

Public Member Functions
def	__init__
def	isNodeInLinnLevelRange
def	lineageFixedList
Static Public Attributes
int	minLinnId = 20
	min level ID of a Linnean rank.

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Detailed Description

Class that assigns classification levels to nodes of the taxonomic tree.
We will train our classifiers to predict these levels.

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Constructor & Destructor Documentation

def MGT::TaxaTree::TaxaLevels::__init__	(		self,
			taxaTree = None
	)

Constructor.
@param taxaTree instance of TaxaTree - if not None, will be modified, so that TaxaLevels.lineage() etc work after words; 
otherwise TaxaLevels.setLevels(taxaTree) should be called separately.

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Member Function Documentation

def MGT::TaxaTree::TaxaLevels::isNodeInLinnLevelRange	(		self,
			node,
			minLevelId,
			maxLevelId
	)

Check if Linnean level id of a node is within a (closed) range

def MGT::TaxaTree::TaxaLevels::lineageFixedList	(		self,
			node,
			null = None,
			format = "id"
	)

Return a list of taxids that correspond to the list of level names returned by getLevelNames("ascend").
If a given level is not present in this node's lineage, the corresponding element is 'null'.

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Member Data Documentation

int MGT::TaxaTree::TaxaLevels::minLinnId = 20 [static]

min level ID of a Linnean rank.

It should correlate with

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The documentation for this class was generated from the following file:

• mgtaxa/MGT/TaxaTree.py