MGT::TaxaTreeDb::TaxaLevelsDb Class Reference

Inheritance diagram for MGT::TaxaTreeDb::TaxaLevelsDb:

List of all members.

Public Member Functions
def	getLevelColumnsComma
def	loadTaxLevelsRows

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Detailed Description

Load our selection of taxonomic ranks into SQL database, create column and row aggregates.

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Member Function Documentation

def MGT::TaxaTreeDb::TaxaLevelsDb::getLevelColumnsComma	(		self,
			alias = None,
			order = "ascend"
	)

Return a string with a comma separated list of level column names.
@param alias - If not None, should be a one-letter SQL table alias to prepend each column name with, e.g. 'b.ti_family'
@param order - return in the order of ascending or descending ranks.

def MGT::TaxaTreeDb::TaxaLevelsDb::loadTaxLevelsRows

(

self )

@todo create table taxa_tree = taxa_node + unclass + dist_top + seq_len(node+subtree)
seq_len calc on memory tree after loading leaf seq_len from all_src

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The documentation for this class was generated from the following file:

• mgtaxa/MGT/TaxaTreeDb.py