List of all members.
Detailed Description
Class that find phage-host pairs based on GenBank annotation as well as from phage and microbe names alone.
The main entry point is assignHostsAndSave()
Member Function Documentation
| def MGT::PhageHostDb::VirHostParser::assignHost |
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self, |
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node, |
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candNames |
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Search candidate names in the taxonomy tree.
@param candNames [(edit_distance,name),(edit_distance,name),...]
sorted by edit_distance.
@ret list of nodes found.
Going from smaller to larger edit distances, find all matches
at a given edit distance and return nodes that are not descendants
of any other found nodes. Once a list of nodes at a given edit distance
is found, the method returns w/o looking at larger edit distances.
The documentation for this class was generated from the following file:
- mgtaxa/MGT/PhageHostDb.py
