MGT::Proj::CrisprGosApp::CrisprGosApp Class Reference

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List of all members.

Public Member Functions
def	loadMgtaxa

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Detailed Description

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See COPYING file distributed along with the MGTAXA package for the copyright and license terms.

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App-derived class for CRISPR array processing in GOS (Global Ocean Sampling) dataset

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Member Function Documentation

def MGT::Proj::CrisprGosApp::CrisprGosApp::loadMgtaxa

(

self )

Load MGTAXA assignments into SQL tables.
We parse the text output file, with each line like the one below:
1118658405050   rank=genus : name=\"\"\"Candidatus Pelagibacter\"\"\" : taxid=198251 <<->>...

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The documentation for this class was generated from the following file:

• mgtaxa/MGT/Proj/CrisprGosApp.py