MGT::ParamScanTestApp::ParamScanTestApp Class Reference

Inheritance diagram for MGT::ParamScanTestApp::ParamScanTestApp:

List of all members.

Public Member Functions
def	parseCmdLinePost
def	doWork
def	train
Static Public Attributes
tuple	batchDepModes = ("parscan","test","train")
	Derived classes should set this to a list of opt.mode values that can result in submision of new batch jobs.

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Detailed Description

App-derived class for one-stop feature creation - parameter scan - final testing

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Member Function Documentation

def MGT::ParamScanTestApp::ParamScanTestApp::doWork	(		self,
			kw
	)

Do the actual work.
Must be redefined in the derived classes.
Should not be called directly by the user except from doWork() in a derived class.
Should work with empty keyword dict, using only self.opt.
If doing batch submision of other App instances, must return a list of sink (final) BatchJob objects.

Reimplemented from MGT::App::App.

def MGT::ParamScanTestApp::ParamScanTestApp::parseCmdLinePost	(		klass,
			options,
			args,
			parser
	)

Optionally modify options and args in-place.
Called at the end of parseCmdLine to allow the derived classes customizing the option processing.
@param options options returned by OptionParser and converted to Struct object
@param args args returned by OptionParser
@param parser OptionParser object used to parse the command line - needed here to call its error() method
if necessary.
options should be modified in place by this method

Reimplemented from MGT::App::App.

def MGT::ParamScanTestApp::ParamScanTestApp::train	(		self,
			idLabsName = None,
			kw
	)

Train on all available samples to use models for prediction of future unknown samples

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Member Data Documentation

tuple MGT::ParamScanTestApp::ParamScanTestApp::batchDepModes = ("parscan","test","train") [static]

Derived classes should set this to a list of opt.mode values that can result in submision of new batch jobs.

Reimplemented from MGT::App::App.

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The documentation for this class was generated from the following file:

• mgtaxa/MGT/ParamScanTestApp.py