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MGT::Kmers::KmerSparseFeatures Member List
This is the complete list of members for
MGT::Kmers::KmerSparseFeatures
, including all inherited members.
doCNuc
(CNuc cnuc)
MGT::KmerCounter
[inline]
doINuc
(INuc inuc)
MGT::KmerCounter
[inline]
finishKmer
()
MGT::KmerCounter
[inline]
getFirstIdState
() const
MGT::KmerCounter
[inline]
getKmerCount
() const
MGT::KmerCounter
[inline]
getKmerId
() const
MGT::KmerCounter
[inline]
getKmerStr
() const
MGT::KmerCounter
[inline]
getLastIdState
() const
MGT::KmerCounter
[inline]
getNumIds
() const
MGT::KmerCounter
[inline]
getState
() const
MGT::KmerCounter
[inline]
getStates
()
MGT::KmerCounter
[inline]
indState
() const
MGT::KmerCounter
[inline]
KmerCounter
(int kmerLen, const AbcConvCharToInt *pAbcConv=0, RC_POLICY revCompPolicy=RC_MERGE, KmerId firstIdState=1)
MGT::KmerCounter
kmerCounts
MGT::Kmers::KmerSparseFeatures
kmerFrequencies
MGT::Kmers::KmerSparseFeatures
m_data
MGT::KmerCounter
[protected]
m_dataDegen
MGT::KmerCounter
[protected]
m_iDataEnd
MGT::KmerCounter
[protected]
m_iDataExtr
MGT::KmerCounter
[protected]
m_revCompPolicy
MGT::KmerCounter
[protected]
maxNumKmers
(ULong seqLen) const
MGT::KmerCounter
[inline]
nextKmer
()
MGT::KmerCounter
[inline]
numKmers
() const
MGT::KmerCounter
[inline]
startKmer
(bool doSort=true)
MGT::KmerCounter
[inline]
sumDegenKmerCounts
() const
MGT::KmerCounter
[inline]
sumKmerCounts
() const
MGT::KmerCounter
[inline]
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