MGT::Kmers::KmerSparseFeatures Member List

This is the complete list of members for MGT::Kmers::KmerSparseFeatures, including all inherited members.

doCNuc(CNuc cnuc)	MGT::KmerCounter	[inline]
doINuc(INuc inuc)	MGT::KmerCounter	[inline]
finishKmer()	MGT::KmerCounter	[inline]
getFirstIdState() const	MGT::KmerCounter	[inline]
getKmerCount() const	MGT::KmerCounter	[inline]
getKmerId() const	MGT::KmerCounter	[inline]
getKmerStr() const	MGT::KmerCounter	[inline]
getLastIdState() const	MGT::KmerCounter	[inline]
getNumIds() const	MGT::KmerCounter	[inline]
getState() const	MGT::KmerCounter	[inline]
getStates()	MGT::KmerCounter	[inline]
indState() const	MGT::KmerCounter	[inline]
KmerCounter(int kmerLen, const AbcConvCharToInt *pAbcConv=0, RC_POLICY revCompPolicy=RC_MERGE, KmerId firstIdState=1)	MGT::KmerCounter
kmerCounts	MGT::Kmers::KmerSparseFeatures
kmerFrequencies	MGT::Kmers::KmerSparseFeatures
m_data	MGT::KmerCounter	[protected]
m_dataDegen	MGT::KmerCounter	[protected]
m_iDataEnd	MGT::KmerCounter	[protected]
m_iDataExtr	MGT::KmerCounter	[protected]
m_revCompPolicy	MGT::KmerCounter	[protected]
maxNumKmers(ULong seqLen) const	MGT::KmerCounter	[inline]
nextKmer()	MGT::KmerCounter	[inline]
numKmers() const	MGT::KmerCounter	[inline]
startKmer(bool doSort=true)	MGT::KmerCounter	[inline]
sumDegenKmerCounts() const	MGT::KmerCounter	[inline]
sumKmerCounts() const	MGT::KmerCounter	[inline]