MGT::Kmers::KmerSparseFeatures Member List

This is the complete list of members for MGT::Kmers::KmerSparseFeatures, including all inherited members.
doCNuc(CNuc cnuc)MGT::KmerCounter [inline]
doINuc(INuc inuc)MGT::KmerCounter [inline]
finishKmer()MGT::KmerCounter [inline]
getFirstIdState() const MGT::KmerCounter [inline]
getKmerCount() const MGT::KmerCounter [inline]
getKmerId() const MGT::KmerCounter [inline]
getKmerStr() const MGT::KmerCounter [inline]
getLastIdState() const MGT::KmerCounter [inline]
getNumIds() const MGT::KmerCounter [inline]
getState() const MGT::KmerCounter [inline]
getStates()MGT::KmerCounter [inline]
indState() const MGT::KmerCounter [inline]
KmerCounter(int kmerLen, const AbcConvCharToInt *pAbcConv=0, RC_POLICY revCompPolicy=RC_MERGE, KmerId firstIdState=1)MGT::KmerCounter
kmerCountsMGT::Kmers::KmerSparseFeatures
kmerFrequenciesMGT::Kmers::KmerSparseFeatures
m_dataMGT::KmerCounter [protected]
m_dataDegenMGT::KmerCounter [protected]
m_iDataEndMGT::KmerCounter [protected]
m_iDataExtrMGT::KmerCounter [protected]
m_revCompPolicyMGT::KmerCounter [protected]
maxNumKmers(ULong seqLen) const MGT::KmerCounter [inline]
nextKmer()MGT::KmerCounter [inline]
numKmers() const MGT::KmerCounter [inline]
startKmer(bool doSort=true)MGT::KmerCounter [inline]
sumDegenKmerCounts() const MGT::KmerCounter [inline]
sumKmerCounts() const MGT::KmerCounter [inline]