MGT::Kmers::NORM_POLICY Class Reference

Feature normalization policy. More...

List of all members.

Static Public Attributes
int	NONE_ROW = 0x0001
	no row-wise normalization
int	EU_ROW = 0x0002
	euclidian distance row-wise normalization (divide by sqrt(dot(x,x)))
int	EXPECT = 0x0010
	normalize by expected counts
int	FREQ = 0x0020
	normalize as frequency (n_k/sum(n_k) for each k-mer length).
int	REVERSE = 0x0040
	normalize by counts observed in a string-reversed sequence

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Detailed Description

Feature normalization policy.

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Member Data Documentation

int MGT::Kmers::NORM_POLICY::FREQ = 0x0020 [static]

normalize as frequency (n_k/sum(n_k) for each k-mer length).

EU_ROW can be applied afterwards

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The documentation for this class was generated from the following file:

• mgtaxa/MGT/Kmers.py