Functions

test_ImmAppInner Namespace Reference

Functions

def genRandomSeqDbIid
def genRandomSeqDbCat

Detailed Description

Test internal behaviour of Glimmer ICM implementation.
We see if the average absolute score values depend on the
length of training sequence.

Function Documentation

def test_ImmAppInner::genRandomSeqDbCat (   path,
  length,
  nCopies 
)
Generate random reference sequences as SeqDbFasta.
The first sequence is generated as random, and each next
one is a concatenation of N copies of the first.
def test_ImmAppInner::genRandomSeqDbIid (   path,
  lengths 
)
Generate random reference sequences as SeqDbFasta.
Each generated sequence is generated independently